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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25907067_25910178_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
25907067 - 25910178
Intron Length:
3112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCATA
5'SS Class:
weak_major
3'SS Sequence:
CTCTGTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAGCTATTAATT
Flanking Amino Acid:
MEKIIQQPLPDCSLRMYGSC
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
70.6
41.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.4
0.71
0.8
72.6
37.7
Minor 5ss
66.1
0.54
2
74.9
41.2
Minor BPS
57.5
0.31
1.6
71.54
39.3

Associated Gene:

Gene:
TUT4
Ensembl Gene ID:
ENSAPLG00000006345
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006642
25880304 - 25918519
38216