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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_25951689_25959773_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
25951689 - 25959773
Intron Length:
8085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
PYEHSYMWWLSVGALVGLSI
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
63.9
42.4
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.5
0.8
0.6
85.3
22
Minor 5ss
27.2
-2.6
3.7
36.3
48.1
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
SHISAL2A
Ensembl Gene ID:
ENSAPLG00000023874
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020092
25951141 - 25963877
12737