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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26000139_26001026_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26000139 - 26001026
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCACA
5'SS Class:
major
3'SS Sequence:
TCTTCGTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTTAT
U12 Branch Point Sequence:
TCTTCGTTGACA
Flanking Amino Acid:
KLGAYQAIGKGGLDLDLKAA
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
67.6
39.4
Major BPS
64.7
0.37
1.2
55.4
41.7
Major PPT
75.7
0.58
1
71.7
38.2
Minor 5ss
32.8
-2
3.1
40.2
45.7
Minor BPS
65.6
0.49
2.1
78.22
38.8

Associated Gene:

Gene:
COA7
Ensembl Gene ID:
ENSAPLG00000007076
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007335
25999687 - 26001344
1658