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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26009273_26011283_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26009273 - 26011283
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAACAA
5'SS Class:
major
3'SS Sequence:
TGTTTTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TGTTTTCCAACA
Flanking Amino Acid:
DRLLQTMAFHGLLNDGTVGI
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
62.9
37
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
78.5
0.64
0.9
74.4
35.3
Minor 5ss
30.8
-2.2
3.1
35.6
42.2
Minor BPS
51.3
0.04
1.8
68.76
37.4

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930