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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26014406_26015692_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26014406 - 26015692
Intron Length:
1287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
GTGTATGTAAGT
Flanking Amino Acid:
MEKTKPEILKLVVIGMRNHP
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
81.3
0.7
0.9
77.9
35.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
44.6
-0.3
2.3
65.01
45.6

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930