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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26015870_26017389_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26015870 - 26017389
Intron Length:
1520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTCTCTGAAAT
Flanking Amino Acid:
AMEHFPNHQQLQKNCLLSLC
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.5
30.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81.4
0.71
0.8
76.7
31.8
Minor 5ss
31.4
-2.1
3.5
46.6
48.7
Minor BPS
59.2
0.37
1.6
75.47
40.7

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930