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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26017455_26018158_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26017455 - 26018158
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTAACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TTATGTTTAACT
Flanking Amino Acid:
DRILQDVPFNRFEAAKLVMQ
Intron Amino Acid Position:
441

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
79.1
0.65
0.9
74.7
39.9
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
73
0.8
1.7
88.57
36.5

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930