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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26018259_26018346_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26018259 - 26018346
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAT
5'SS Class:
major
3'SS Sequence:
TATTCATTTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTCATTTATA
Flanking Amino Acid:
VAIISILAAKLSTEQTAQLG
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
74.2
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.5
0.66
0.8
73.8
35.5
Minor 5ss
33.4
-1.9
3.3
48.6
47.1
Minor BPS
59.5
0.29
1.9
73.8
37.9

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930