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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26018398_26018986_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26018398 - 26018986
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAC
U12 Branch Point Sequence:
ACAGTCATAACT
Flanking Amino Acid:
QLGAELFIVRQLLQIVKQKT
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
74.1
38.3
Major BPS
65.3
0.38
1.1
66.2
36.5
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
33.1
-1.9
2.8
32.9
41.9
Minor BPS
52.3
0.15
1.7
67.6
43.1

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930