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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26019149_26019253_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26019149 - 26019253
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTTTTTTCCACA
Flanking Amino Acid:
GLELFMRVLESFPSESSIQQ
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
66.4
0.41
1
61.3
37
Major PPT
87.7
0.85
0.6
83.6
24.8
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
49.4
-0
2
66.33
40.9

Associated Gene:

Gene:
ZYG11A
Ensembl Gene ID:
ENSAPLG00000007113
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007419
26004381 - 26019310
14930