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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26027591_26028232_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26027591 - 26028232
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
MAIEGMCYAQNIPTRDRQEG
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.4
32.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
0.9
70.9
37.9
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
ECHDC2
Ensembl Gene ID:
ENSAPLG00000007553
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007876
26027513 - 26035069
7557