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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26028281_26030920_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26028281 - 26030920
Intron Length:
2640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCATCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTTCTCTCATCT
Flanking Amino Acid:
LTLAKEILPQVDIASGMAIE
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.2
87.1
30
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.4
0.66
0.8
73.3
30.4
Minor 5ss
34.7
-1.7
2.7
42.8
44
Minor BPS
58.8
0.35
1.8
81.56
39.8

Associated Gene:

Gene:
ECHDC2
Ensembl Gene ID:
ENSAPLG00000007553
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007876
26027513 - 26035069
7557