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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26031555_26032791_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26031555 - 26032791
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TTGTTATTAAAT
Flanking Amino Acid:
KRLRNLMDEIASSAKMGLIE
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
66.7
0.38
1
63.3
41.9
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
64.8
0.54
1.7
82.16
38.9

Associated Gene:

Gene:
ECHDC2
Ensembl Gene ID:
ENSAPLG00000007553
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007876
26027513 - 26035069
7557