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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26032879_26033418_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26032879 - 26033418
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCGTGCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTCCCTGAATT
Flanking Amino Acid:
KSEVKGVFCAGADLKERAQM
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
63
0.29
1
59.9
40.7
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
76.6
0.91
1.3
90.83
32.1

Associated Gene:

Gene:
ECHDC2
Ensembl Gene ID:
ENSAPLG00000007553
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007876
26027513 - 26035069
7557