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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26038598_26039060_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26038598 - 26039060
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTGTTTCAAAT
Flanking Amino Acid:
LFMARQLVEGGLADCVLALG
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.8
0.6
1.1
80.6
35.6
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
55.5
0.25
1.7
76.7
40.1

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484