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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26039120_26040137_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26039120 - 26040137
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCT|GCAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
FEKMGKGSIPFMDRTNPLDK
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.5
69.4
38.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
89
0.88
0.6
88.7
20.7
Minor 5ss
27.5
-2.6
4.4
48.8
47.3
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484