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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26040265_26041126_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
26040265 - 26041126
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATTGTCA
5'SS Class:
weak_major
3'SS Sequence:
TTTCTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGTATTTCAACA
Flanking Amino Acid:
SAGKEHMEKYGTNPEYFAKI
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.4
0.29
1.1
55.1
38.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
89.2
0.88
0.7
81.3
30.7
Minor 5ss
43.7
-0.7
3
56.8
47.5
Minor BPS
52.4
0.07
1.5
61.7
38.1

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484