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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26041191_26041440_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26041191 - 26041440
Intron Length:
250

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
WKNHSHSTNNPYSQFQEEYT
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.3
70.6
37
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
31.5
-2.1
2.7
37.8
40.1
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484