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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26041528_26041855_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26041528 - 26041855
Intron Length:
328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAA
U12 Branch Point Sequence:
TTCCTTTCAATT
Flanking Amino Acid:
IFDYLTVLQCCPTTNGAAAA
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.3
40.1
Major BPS
78.4
0.71
0.9
81.3
29.8
Major PPT
69.9
0.45
0.9
71.1
33.6
Minor 5ss
31.8
-2.1
3.1
36.5
41.9
Minor BPS
57
0.3
1.5
72.72
39

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484