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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_260443_261523_R

Intron Information:

Intron Rank:
143567
Intron Class:
major
Intron Phase:
Intron Coordinates:
260443 - 261523
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TTGTCCTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
63.5
0.28
1.8
69.26
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020161
260332 - 261836
1505