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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26047741_26050266_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26047741 - 26050266
Intron Length:
2526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GATATATTAATT
Flanking Amino Acid:
LYGMGFPPARSTGRVAAVPL
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
57.2
0.3
1.6
71.89
38.6

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484