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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26052408_26053032_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26052408 - 26053032
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATACAGT
Flanking Amino Acid:
LMTGKMNPQTAFFQGKLKVS
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
89.3
0.88
0.7
88.9
28.2
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
44.4
-0.3
2.5
71.16
45.6

Associated Gene:

Gene:
SCP2
Ensembl Gene ID:
ENSAPLG00000008197
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008530
26036645 - 26053128
16484