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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26063802_26064111_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26063802 - 26064111
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCA|GCCCGTGGT
5'SS Class:
weak_major
3'SS Sequence:
CCCCCCGGGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
GGTTTCAGAAGG
Flanking Amino Acid:
QPRGADPKLF
Intron Amino Acid Position:
1

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.9
0.05
1.4
60
41.6
Major BPS
64.9
0.37
1
61
37.5
Major PPT
46.7
-0.1
1.1
43.1
30.9
Minor 5ss
20.6
-3.4
4
36.8
41.5
Minor BPS
44.1
-0.5
2
50.65
42.9

Associated Gene:

Gene:
PODN
Ensembl Gene ID:
ENSAPLG00000008749
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009095
26063800 - 26083454
19655