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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26064395_26066148_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26064395 - 26066148
Intron Length:
1754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCC
5'SS Class:
major
3'SS Sequence:
TCCTTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TGATGATTAATC
Flanking Amino Acid:
PELTNHLSLQNNQIEEIFPE
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
69.7
36.5
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
83.4
0.75
0.6
83.8
24.4
Minor 5ss
29.4
-2.4
3.6
41.9
45.1
Minor BPS
52
0.04
2
65.34
40.1

Associated Gene:

Gene:
PODN
Ensembl Gene ID:
ENSAPLG00000008749
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009095
26063800 - 26083454
19655