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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26067884_26071411_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26067884 - 26071411
Intron Length:
3528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTGCATTTAATT
Flanking Amino Acid:
LNYLYLANNKLTVAPKFLPN
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
64.4
0.53
1.5
78.19
38.4

Associated Gene:

Gene:
PODN
Ensembl Gene ID:
ENSAPLG00000008749
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009095
26063800 - 26083454
19655