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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26073728_26075623_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26073728 - 26075623
Intron Length:
1896

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGACA
5'SS Class:
major
3'SS Sequence:
CTGGTGACTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TCATGCTAAATA
Flanking Amino Acid:
PPALYKLHLKNNKLEKIPKG
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
72.3
39
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
61.7
0.26
1
51.7
42.7
Minor 5ss
38.1
-1.3
3.1
49.8
46.2
Minor BPS
50.1
-0
2.1
63.45
43.5

Associated Gene:

Gene:
PODN
Ensembl Gene ID:
ENSAPLG00000008749
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009095
26063800 - 26083454
19655