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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26097788_26099485_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26097788 - 26099485
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACAGCA
5'SS Class:
major
3'SS Sequence:
GCTTTTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTCCAAATCT
Flanking Amino Acid:
RKEFIKDGDEVPLICETKPI
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
36.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
70.1
0.45
0.9
65.5
35.2
Minor 5ss
36.3
-1.6
3.3
48.6
47.1
Minor BPS
49.8
0.07
2.2
77.83
44.1

Associated Gene:

Gene:
SLC1A7
Ensembl Gene ID:
ENSAPLG00000008833
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009200
26097551 - 26144067
46517