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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26118126_26130231_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26118126 - 26130231
Intron Length:
12106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAACTATG
5'SS Class:
major
3'SS Sequence:
TGTTCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTGTTCATT
Flanking Amino Acid:
SSADALLDLIRNMFPANLVE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
73.1
43.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.9
70.5
40.2
Minor 5ss
45.4
-0.5
2.6
60.8
43.7
Minor BPS
49.3
0.02
2.4
76.1
41.2

Associated Gene:

Gene:
SLC1A7
Ensembl Gene ID:
ENSAPLG00000008833
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009200
26097551 - 26144067
46517