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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26118126_26142777_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26118126 - 26142777
Intron Length:
24652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTGTTCATT
Flanking Amino Acid:
KMLILPLVVSRNMFPANLVE
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
0.9
70.5
40.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
49.3
0.02
2.4
76.1
41.2

Associated Gene:

Gene:
SLC1A7
Ensembl Gene ID:
ENSAPLG00000008833
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025655
26099354 - 26144067
44714