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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26146650_26150670_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26146650 - 26150670
Intron Length:
4021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAATT
Flanking Amino Acid:
KQNKHTSYITGPWFDMYLKS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84
0.77
0.8
75.9
38
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
70.8
0.73
1.5
84.72
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022050
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046696
26145499 - 26154135
8637