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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26156188_26159448_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26156188 - 26159448
Intron Length:
3261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTATTCCCAATT
Flanking Amino Acid:
GLEPVDFQPQAGFAAEGAES
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
23.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.1
0.81
0.8
80.6
37
Minor 5ss
37.4
-1.4
2.9
50.4
46
Minor BPS
55.3
0.24
1.9
77.68
38.7

Associated Gene:

Gene:
CZIB
Ensembl Gene ID:
ENSAPLG00000009211
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009590
26155222 - 26163358
8137