About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26160065_26161675_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
26160065 - 26161675

Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTACGTGCT

5'SS Class:
major

3'SS Sequence:
CTCTTCTTTATAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
ATGTCAC

U12 Branch Point Sequence:
TCTTCTTTATAG

Flanking Amino Acid:
CKLCSRENSIDILSQTIKPY

Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79
0.68
1
71.7
38.2

Major BPS
66.1
0.4
1.2
69.1
37.9

Major PPT
84.1
0.77
0.7
79.7
26

Minor 5ss
34.4
-1.8
3.4
47.2
43.5

Minor BPS
57.7
0.1
1.8
64.12
44

Associated Gene:

Gene:
CZIB

Ensembl Gene ID:

Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

26155222 - 26163358
8137