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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26161758_26162508_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26161758 - 26162508
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCATGGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
ATGCGATTAAAA
Flanking Amino Acid:
SEKWQYLRLMDSAPLKGGRG
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.7
32.9
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
71.5
0.48
1
65.4
40.9
Minor 5ss
53.6
0.12
2.3
66.5
39.1
Minor BPS
45.9
-0.3
2.1
58.03
40.8

Associated Gene:

Gene:
CZIB
Ensembl Gene ID:
ENSAPLG00000009211
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009590
26155222 - 26163358
8137