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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_261637_261813_R

Intron Information:

Intron Rank:
143568
Intron Class:
major
Intron Phase:
Intron Coordinates:
261637 - 261813
Intron Length:
177

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGCAG
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.3
42.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.9
0.81
0.7
81.1
30.2
Minor 5ss
30.7
-2.2
3.2
37.1
47.5
Minor BPS
67.9
0.56
1.5
78.16
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024572
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020161
260332 - 261836
1505