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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26166337_26166406_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26166337 - 26166406
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCGCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGGTATACAACG
Flanking Amino Acid:
YKNDVMIRKEAYVHKSVMEE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.5
0.44
1
58.7
43
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
43.8
-0.6
2
50.53
43.2

Associated Gene:

Gene:
MAGOH
Ensembl Gene ID:
ENSAPLG00000009324
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009710
26165283 - 26166633
1351