Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26168191_26168572_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26168191 - 26168572

Intron Length:

382

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATATATT

5'SS Class:

major

3'SS Sequence:

GTTTTCTTCCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTACAA

U12 Branch Point Sequence:

GTTGTTGCAACA

Flanking Amino Acid:

KEDDESTEKMSAAALCVTVG

Intron Amino Acid Position:

218

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

78.6

34.9

Major BPS

61.2

0.28

1.1

70.6

34.3

Major PPT

84.5

0.78

0.8

37.2

Minor 5ss

47.3

-0.3

2.7

65.1

41.4

Minor BPS

44.4

-0.4

2.2

59.24

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009340

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028680

26166632 - 26193856

27225