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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26180139_26181088_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26180139 - 26181088
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AATTTTTTCACT
Flanking Amino Acid:
KMLQKVGPDKRIWKEIQKIN
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.4
0.84
0.7
81.3
29.6
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
62.3
0.47
1.7
78.76
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028680
26166632 - 26193856
27225
ENSAPLT00000009780
26167891 - 26199303
31413