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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26183257_26183693_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26183257 - 26183693
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCC
5'SS Class:
strong_major
3'SS Sequence:
ATGTTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTCTTCACA
Flanking Amino Acid:
RWFETQYSVEDIEQYWAAVW
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
33.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78.5
0.64
0.9
72.8
36.9
Minor 5ss
31
-2.2
3.4
42.5
44.5
Minor BPS
63.7
0.43
1.7
72.97
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028680
26166632 - 26193856
27225
ENSAPLT00000009780
26167891 - 26199303
31413