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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26189818_26192011_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26189818 - 26192011
Intron Length:
2194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTTATAG
Flanking Amino Acid:
NMLIKSEVLAKDLCHVILEH
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.5
28.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
92
0.95
0.6
88.5
21.2
Minor 5ss
33.5
-1.9
3.3
43.7
38.1
Minor BPS
63.5
0.29
1.8
72.21
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028680
26166632 - 26193856
27225
ENSAPLT00000009780
26167891 - 26199303
31413