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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26192170_26192523_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26192170 - 26192523
Intron Length:
354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTCAGGTAA
5'SS Class:
major
3'SS Sequence:
TTCAAATGTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTATTTCAAGT
Flanking Amino Acid:
VEGLAQGNLTSLDFLAKFVV
Intron Amino Acid Position:
739

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.9
0.33
1.4
64.8
37.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
64.4
0.32
1
58.7
41.7
Minor 5ss
33.9
-1.8
3.2
42.8
44.5
Minor BPS
49
0
1.8
69.1
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009780
26167891 - 26199303
31413