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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26192552_26193705_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
26192552 - 26193705
Intron Length:
1154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGT|GTAATACAG
5'SS Class:
weak_major
3'SS Sequence:
GTGCTCCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GTGTCTGACACT
Flanking Amino Acid:
TSLDFLAKFVVKLQFAPLAH
Intron Amino Acid Position:
748

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.2
48.3
42
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
74.5
0.55
0.9
70.3
36.3
Minor 5ss
33.4
-1.9
3.1
40.3
45.2
Minor BPS
41.8
-0.5
2.5
63.58
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009780
26167891 - 26199303
31413