About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26193845_26194864_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26193845 - 26194864
Intron Length:
1020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAT
5'SS Class:
major
3'SS Sequence:
AGCTGTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATAAAT
Flanking Amino Acid:
ANSEVTVYYQMHMEEPCFNF
Intron Amino Acid Position:
795

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.6
42.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.1
0.45
1
65.3
45
Minor 5ss
31
-2.2
3.6
46.2
49.1
Minor BPS
48.6
-0
2.3
79.82
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009780
26167891 - 26199303
31413