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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26194918_26196319_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26194918 - 26196319
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTCA
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
ATCTCTTTCATT
Flanking Amino Acid:
FNFLRTKETLGYHVYPAYRN
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
68.6
39.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
76.1
0.59
1
80.2
30.6
Minor 5ss
43.7
-0.7
2.8
48.7
47
Minor BPS
62.3
0.47
1.7
77.48
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009780
26167891 - 26199303
31413