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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26196404_26197410_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26196404 - 26197410
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCCCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
TTGTCTATAACT
Flanking Amino Acid:
ISVTTQATKHNSEFVDKKIE
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
77.7
0.62
0.8
73.7
31.3
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
73.1
0.8
1.6
88.78
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009780
26167891 - 26199303
31413