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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26198448_26199105_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26198448 - 26199105
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTGAATTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TTTCTGGTAACT
Flanking Amino Acid:
GKDRRTLSIHVVGYGEQEQD
Intron Amino Acid Position:
940

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
69.8
0.49
1
61
37.5
Major PPT
76.6
0.6
1
72.9
41.7
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
49
0
2.6
80.65
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009340
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009780
26167891 - 26199303
31413