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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26205466_26205759_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26205466 - 26205759
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TCTTCCTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTCTCCTTAAGT
Flanking Amino Acid:
TAQIGHVYPARVALSLEDDG
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
84.6
0.78
0.7
79.5
26
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
79.8
1.01
1.6
91.7
38.1

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030080
26205427 - 26372372
166946
ENSAPLT00000010806
26205427 - 26372372
166946