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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26208149_26208783_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26208149 - 26208783
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTAAAT
Flanking Amino Acid:
LGPDMKKCYKDLPTTSATVL
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
61.7
0.44
2
87.91
36.3

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010806
26205427 - 26372372
166946
ENSAPLT00000030080
26205427 - 26372372
166946