About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26208937_26209984_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
26208937 - 26209984
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTGAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTTTCTTCCATC
Flanking Amino Acid:
VVFHELKQPKAPDSCELSPQ
Intron Amino Acid Position:
700

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
64.8
0.33
1
61.8
38.4
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
56.6
0.19
1.9
74.09
37.4

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030080
26205427 - 26372372
166946
ENSAPLT00000010806
26205427 - 26372372
166946