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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26210127_26212084_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
26210127 - 26212084
Intron Length:
1958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTC
5'SS Class:
strong_major
3'SS Sequence:
GCATTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATGCATT
Flanking Amino Acid:
SHPFGLAVFEDRVFWTDLEN
Intron Amino Acid Position:
653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.8
82.4
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.2
0.59
0.9
69.8
36.4
Minor 5ss
35
-1.7
3.5
49.9
46.6
Minor BPS
48.5
-0
2.1
77.48
39.2

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010806
26205427 - 26372372
166946
ENSAPLT00000030080
26205427 - 26372372
166946