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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_26214570_26216161_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
26214570 - 26216161
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
CGAGTCTTATCT
Flanking Amino Acid:
WCDLFYRKIYSAYIDKASDT
Intron Amino Acid Position:
490

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
86.1
0.81
0.8
80.6
31.3
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
50.6
0.1
1.8
64.72
45.7

Associated Gene:

Gene:
LRP8
Ensembl Gene ID:
ENSAPLG00000010336
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030080
26205427 - 26372372
166946
ENSAPLT00000010806
26205427 - 26372372
166946